$ bgcflow
Usage: bgcflow [OPTIONS] COMMAND [ARGS]...
A snakemake wrapper and utility tools for BGCFlow
(https://github.com/NBChub/bgcflow)
Options:
--version Show the version and exit.
-h, --help Show this message and exit.
Commands:
build Use DBT to build DuckDB database from BGCFlow results.
clone Use git to clone BGCFlow to local directory.
deploy [EXPERIMENTAL] Deploy BGCFlow locally using snakedeploy.
get-result View a tree of a project results or get a copy using Rsync.
init Create projects or initiate BGCFlow config.
rules Get description of available rules from BGCFlow.
run A snakemake CLI wrapper to run BGCFlow.
serve Generate static HTML report for BGCFlow run(s)